= Discovery stage. |
= Translation stage. |
= Clinically available. |
Topic: Metabolomics
Authors: Karol Jaroch, Barbara Bojko
|
|||
Short Abstract Use of solid phase microextraction (SPME) in combination with high-resolution mass spectrometry (HRMS) for cell culture metabolomics analysis allows getting more sophisticated data from in vitro assays. SPME was employed for determination of metabolomic changes after induction of non-small cell lung cancer cell line (A549) or melanoma (B16F10) cell lines with combretastatin A4 phosphate and combretastatin A4. Both, up- and downregulation of aminoacids (e.g.: valine, proline,) low molecular mass acids (pyroglutamic acid) and amides (palmitamide) was found as distinguishing between treated and non-treated cells. The whole procedure can be considered as HTS and „non-invasive” for cells. The use of SPME-(LC)-HRMS with cell cultures in high-throughput manner were presented for the first time. Work has been financed by Nicolaus Copernicus University statutory grant No 451. |
|||
Long Abstract Introduction The use of solid phase microextraction (SPME) in combination with high-resolution mass spectrometry (HRMS) for cell culture metabolomics analysis allows getting more sophisticated data from in vitro assays. Due to fact that SPME is an equilibrium based non-exhaustive microextraction technique it enables performing multiple extractions from a single sample with no influence on the tested cells. Moreover, the opportunity of time course analysis from a single sample reduces the total number of samples, and eliminates inter-batch variability, for which cell culturing can be significant. Methods Solid phase microextraction was employed for determination of metabolomic changes after induction of non-small cell lung cancer cell line (A549) or melanoma (B16F10) cell lines with combretastatin A4 phosphate and combretastatin A4. Extraction protocol was established directly in 96-well plate, for small molecules extraction, a SPME fiber format was utilized with multiple analysis from the same sample. For determination of effective concentration of CA4, the MTT-based cytotoxicity assay was performed. To ensure that extraction protocol will not decrease the CA4 amount to non-toxic level the protein binding and extraction recovery were determined. The SPME was performed directly from cell culture medium causing no effect on cell growth. The whole procedure can be considered as HTS and non-disturbing for cells. Next, metabolomics analysis by LC-HRMS (Q-Exactive Focus) was performed. Results While there was no difference in cell number, it was observed that the extracellular metabolic pattern of both cell lines was changed after administration of the tested drug. This suggests a pharmacological activity of administered compound towards studied cell line models. The principal component analysis showed a difference between cells exposed and unexposed to CA4. The most important metabolomics changes (both, up- and downregulation) were reflected in the levels of amino acids (e.g.: valine, proline,) low molecular mass acids (pyroglutamic acid) and amides (palmitamide). Conclusions & Discussion The results indicate, that using a direct SPME immersion from cell cultures after exposure to drug allows obtaining information changes during single experiment without affecting cells growth, so the whole procedure can be considered as HTS and „non-invasive” for cells. Currently, there is ongoing work on the biological interpretation of the results towards identifying cellular metabolic pathways altered by CA4 and CA4P. The use of SPME-(LC)-HRMS with cell cultures in a high-throughput manner were presented for the first time. |
|||
References & Acknowledgements: Work has been financed by Nicolaus Copernicus University (Toruń, Poland) statutory grant No 451. |
Description | Y/N | Source |
Grants | no | Nicolaus Copernicus in Torun |
Salary | no | |
Board Member | no | |
Stock | no | |
Expenses | no |
IP Royalty: no
Planning to mention or discuss specific products or technology of the company(ies) listed above: | no |